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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
BRCA cis rs1061377 1 rs13109200 chr4:39126016 KLHL5 chr4:39046659-39123828:+ -0.14 -4.45 9.49E-6 Uric acid levels
BRCA cis rs13110633 1 rs13110633 chr4:48470296 SLC10A4 chr4:48485360-48491541:+ -0.16 -3.57 0.000371 Schizophrenia
BRCA cis rs7692995 1 rs13112545 chr4:18020822 NCAPG chr4:17812525-17846485:+ 0.08 3.53 0.000429 Height
BRCA cis rs7665090 1 rs13112557 chr4:103552253 MANBA chr4:103552644-103682151:- 0.21 5.47 5.53E-8 Primary biliary cirrhosis
BRCA cis rs7692995 1 rs13116230 chr4:18004014 NCAPG chr4:17812525-17846485:+ 0.08 3.68 0.000242 Height
BRCA cis rs13118159 1 rs13118159 chr4:1365127 ATP5I chr4:666226-668122:- 0.1 3.54 0.000412 Longevity
BRCA cis rs13118159 1 rs13118159 chr4:1365127 CRIPAK chr4:1385340-1389782:+ 0.23 7.39 2.93E-13 Longevity
BRCA cis rs13118159 1 rs13118159 chr4:1365127 GAK chr4:843066-926174:- 0.1 3.52 0.000447 Longevity
BRCA cis rs13118159 1 rs13118159 chr4:1365127 KIAA1530 chr4:1341104-1381836:+ 0.14 5 6.82E-7 Longevity
BRCA cis rs13118159 1 rs13118159 chr4:1365127 TMEM175 chr4:926262-952441:+ 0.09 3.47 0.000543 Longevity
BRCA cis rs11733284 1 rs13120847 chr4:48030036 CNGA1 chr4:47937996-48018610:- 0.22 7.6 6.43E-14 Renal underexcretion gout;Gout
BRCA cis rs11733284 1 rs13120847 chr4:48030036 NIPAL1 chr4:48018791-48039078:+ 0.11 3.67 0.000255 Renal underexcretion gout;Gout
BRCA cis rs6852678 1 rs13123545 chr4:76535466 G3BP2 chr4:76567955-76598667:- -0.12 -3.99 7.08E-5 Magnesium levels
BRCA cis rs7692995 1 rs13123703 chr4:18029165 NCAPG chr4:17812525-17846485:+ 0.11 4.45 9.64E-6 Height
BRCA cis rs7692995 1 rs13125804 chr4:17998043 NCAPG chr4:17812525-17846485:+ 0.1 4.17 3.29E-5 Height